added Doom Emacs Config

config.org

@@ -1,4 +1,35 @@
 #+title: PWL Arch Linux Config
+#+OPTIONS: toc:3
+
+* Table of Contents :toc:
+- [[#prerequisites][Prerequisites]]
+- [[#literate-file-headers][Literate File Headers]]
+  - [[#updatesh][update.sh]]
+  - [[#packagestxt][packages.txt]]
+  - [[#pathsh][path.sh]]
+  - [[#aliassh][alias.sh]]
+  - [[#doom-emacs][Doom Emacs]]
+- [[#package-management][Package Management]]
+  - [[#arch-and-aur-packages][Arch and AUR Packages]]
+- [[#base-system][Base System]]
+  - [[#arch-linux][Arch Linux]]
+  - [[#networking][Networking]]
+  - [[#man-pages-and-texinfo][Man Pages and Texinfo]]
+- [[#desktop-environments-and-window-manager][Desktop Environments and Window Manager]]
+  - [[#lightdm][LightDM]]
+  - [[#gnome][GNOME]]
+- [[#doom-emacs-1][Doom Emacs]]
+  - [[#installation][Installation]]
+  - [[#doom-modules][Doom Modules]]
+  - [[#general-configuration][General Configuration]]
+  - [[#multilanguage-spellcheck][Multilanguage Spellcheck]]
+  - [[#latex][LaTeX]]
+  - [[#org-mode][Org Mode]]
+  - [[#python][Python]]
+- [[#shells][Shells]]
+  - [[#aliases][Aliases]]
+- [[#themeing][Themeing]]
+  - [[#doom-emacs-2][Doom Emacs]]
 
 * Prerequisites
 - Completed Arch Linux Installation
@@ -18,6 +49,7 @@
 #+end_src
 
 ** packages.txt
+contains all Arch and AUR packages
 #+begin_src shell :tangle pkg-list.txt
 # DO NOT EDIT THIS FILE DIRECTLY
 # This is a file generated from a literate programing source file
@@ -26,22 +58,203 @@
 
 #+end_src
 
+** path.sh
+contains all modifications to the path variables
+#+begin_src shell :tangle path.sh
+#!/bin/sh
+# DO NOT EDIT THIS FILE DIRECTLY
+# This is a file generated from a literate programing source file
+# You should make any changes there and regenerate it from Emacs org-mode
+# using org-babel-tangle (C-c C-v t)
+
+#+end_src
+
+** alias.sh
+#+begin_src shell :tangle alias.sh
+#!/bin/sh
+# DO NOT EDIT THIS FILE DIRECTLY
+# This is a file generated from a literate programing source file
+# You should make any changes there and regenerate it from Emacs org-mode
+# using org-babel-tangle (C-c C-v t)
+
+#+end_src
+
+** Doom Emacs
+We start by simply defining the standard headers used by the three files. These headers come from the initial files generated by =doom install=, and contain either some Emacs-LISP relevant indicators like =lexical-binding=, or instructions about the contents of the file.
+*** init.el
+#+html: <details><summary>init.el</summary>
+#+begin_src emacs-lisp :tangle ~/.config/doom/init.el
+;;; init.el -*- lexical-binding: t; -*-
+
+;; DO NOT EDIT THIS FILE DIRECTLY
+;; This is a file generated from a literate programing source file
+;; You should make any changes there and regenerate it from Emacs org-mode
+;; using org-babel-tangle (C-c C-v t)
+
+;; This file controls what Doom modules are enabled and what order they load
+;; in. Remember to run 'doom sync' after modifying it!
+
+;; NOTE Press 'SPC h d h' (or 'C-h d h' for non-vim users) to access Doom's
+;;      documentation. There you'll find a "Module Index" link where you'll find
+;;      a comprehensive list of Doom's modules and what flags they support.
+
+;; NOTE Move your cursor over a module's name (or its flags) and press 'K' (or
+;;      'C-c c k' for non-vim users) to view its documentation. This works on
+;;      flags as well (those symbols that start with a plus).
+;;
+;;      Alternatively, press 'gd' (or 'C-c c d') on a module to browse its
+;;      directory (for easy access to its source code).
+#+end_src
+#+html: </details>
+
+*** packages.el
+#+html: <details><summary>packages.el</summary>
+#+begin_src emacs-lisp :tangle ~/.config/doom/packages.el
+;; -*- no-byte-compile: t; -*-
+;;; $DOOMDIR/packages.el
+
+;; DO NOT EDIT THIS FILE DIRECTLY
+;; This is a file generated from a literate programing source file
+;; You should make any changes there and regenerate it from Emacs org-mode
+;; using org-babel-tangle (C-c C-v t)
+
+;; To install a package with Doom you must declare them here and run 'doom sync'
+;; on the command line, then restart Emacs for the changes to take effect -- or
+;; use 'M-x doom/reload'.
+
+;; To install SOME-PACKAGE from MELPA, ELPA or emacsmirror:
+;;(package! some-package)
+
+;; To install a package directly from a remote git repo, you must specify a
+;; `:recipe'. You'll find documentation on what `:recipe' accepts here:
+;; https://github.com/raxod502/straight.el#the-recipe-format
+;;(package! another-package
+;;  :recipe (:host github :repo "username/repo"))
+
+;; If the package you are trying to install does not contain a PACKAGENAME.el
+;; file, or is located in a subdirectory of the repo, you'll need to specify
+;; `:files' in the `:recipe':
+;;(package! this-package
+;;  :recipe (:host github :repo "username/repo"
+;;           :files ("some-file.el" "src/lisp/*.el")))
+
+;; If you'd like to disable a package included with Doom, you can do so here
+;; with the `:disable' property:
+;;(package! builtin-package :disable t)
+
+;; You can override the recipe of a built in package without having to specify
+;; all the properties for `:recipe'. These will inherit the rest of its recipe
+;; from Doom or MELPA/ELPA/Emacsmirror:
+;;(package! builtin-package :recipe (:nonrecursive t))
+;;(package! builtin-package-2 :recipe (:repo "myfork/package"))
+
+;; Specify a `:branch' to install a package from a particular branch or tag.
+;; This is required for some packages whose default branch isn't 'master' (which
+;; our package manager can't deal with; see raxod502/straight.el#279)
+;;(package! builtin-package :recipe (:branch "develop"))
+
+;; Use `:pin' to specify a particular commit to install.
+;;(package! builtin-package :pin "1a2b3c4d5e")
+
+;; Doom's packages are pinned to a specific commit and updated from release to
+;; release. The `unpin!' macro allows you to unpin single packages...
+;;(unpin! pinned-package)
+;; ...or multiple packages
+;;(unpin! pinned-package another-pinned-package)
+;; ...Or *all* packages (NOT RECOMMENDED; will likely break things)
+;;(unpin! t)
+#+end_src
+#+html: </details>
+
+*** config.el
+#+html: <details><summary>config.el</summary>
+#+begin_src emacs-lisp :tangle ~/.config/doom/config.el
+;;; $DOOMDIR/config.el -*- lexical-binding: t; -*-
+
+;; DO NOT EDIT THIS FILE DIRECTLY
+;; This is a file generated from a literate programing source file
+;; You should make any changes there and regenerate it from Emacs org-mode
+;; using org-babel-tangle (C-c C-v t)
+
+;; Place your private configuration here! Remember, you do not need to run 'doom
+;; sync' after modifying this file!
+
+;; Some functionality uses this to identify you, e.g. GPG configuration, email
+;; clients, file templates and snippets.
+;; (setq user-full-name "John Doe"
+;;      user-mail-address "john@doe.com")
+
+;; Doom exposes five (optional) variables for controlling fonts in Doom. Here
+;; are the three important ones:
+;;
+;; + `doom-font'
+;; + `doom-variable-pitch-font'
+;; + `doom-big-font' -- used for `doom-big-font-mode'; use this for
+;;   presentations or streaming.
+;;
+;; They all accept either a font-spec, font string ("Input Mono-12"), or xlfd
+;; font string. You generally only need these two:
+;; (setq doom-font (font-spec :family "monospace" :size 12 :weight 'semi-light)
+;;       doom-variable-pitch-font (font-spec :family "sans" :size 13))
+
+;; There are two ways to load a theme. Both assume the theme is installed and
+;; available. You can either set `doom-theme' or manually load a theme with the
+;; `load-theme' function. This is the default:
+;; (setq doom-theme 'doom-one)
+
+;; If you use `org' and don't want your org files in the default location below,
+;; change `org-directory'. It must be set before org loads!
+;; (setq org-directory "~/org/")
+
+;; This determines the style of line numbers in effect. If set to `nil', line
+;; numbers are disabled. For relative line numbers, set this to `relative'.
+;; (setq display-line-numbers-type t)
+
+;; Here are some additional functions/macros that could help you configure Doom:
+;;
+;; - `load!' for loading external *.el files relative to this one
+;; - `use-package!' for configuring packages
+;; - `after!' for running code after a package has loaded
+;; - `add-load-path!' for adding directories to the `load-path', relative to
+;;   this file. Emacs searches the `load-path' when you load packages with
+;;   `require' or `use-package'.
+;; - `map!' for binding new keys
+;;
+;; To get information about any of these functions/macros, move the cursor over
+;; the highlighted symbol at press 'K' (non-evil users must press 'C-c c k').
+;; This will open documentation for it, including demos of how they are used.
+;;
+;; You can also try 'gd' (or 'C-c c d') to jump to their definition and see how
+;; they are implemented.
+#+end_src
+#+html: </details>
+
 * Package Management
 ** Arch and AUR Packages
-*** Package Manager
+*** Yay
+**** Prerequisites
+#+begin_src shell :tangle pkg-list.txt
+git
+base-devel
+#+end_src
+
+**** Installation
 General Package Management is done via [[https://github.com/Jguer/yay][Yay]].
 ~update.sh~ will install it if needed.
 #+begin_src shell :tangle update.sh
-if ! command -v yay &> /dev/null
+command_name="yay"
-then
+
-    echo "Installing Yay ..."
+if ! command -v "$command_name" &> /dev/null; then
-    pacman -S --needed git base-devel
+    echo "Installing $command_name ..."
-    git clone https://aur.archlinux.org/yay.git
+    git clone https://aur.archlinux.org/yay.git /tmp/yay
-    cd yay
+    cd /tmp/yay
     makepkg -si
 fi
 #+end_src
-
+after installation add yay to the packages list to ensure it doesn't delete itself
+#+begin_src shell :tangle pkg-list.txt
+yay
+#+end_src
 *** Package Installation
 remove all packages not in ~pkg-list.txt~
 #+begin_src shell :tangle update.sh
@@ -66,7 +279,6 @@ and install the packages specified in ~pkg-list.txt~
 yay -S --needed `grep -v '^#' pkg-list.txt`
 #+end_src
 
-
 * Base System
 ** Arch Linux
 the following packages are required for basic operation and should never be deleted
@@ -125,3 +337,459 @@ fi
 #+begin_src shell :tangle pkg-list.txt
 gnome
 #+end_src
+
+* Doom Emacs
+** Installation
+*** [[https://github.com/doomemacs/doomemacs#prerequisites][Prerequisites]]
+#+begin_src shell :tangle pkg-list.txt
+git
+emacs
+ripgrep
+findutils
+fd
+#+end_src
+*** Doom Installation
+~update.sh~ will install Doom Emacs if needed
+#+begin_src shell :tangle update.sh
+command_name="doom"
+
+if ! command -v "$command_name" &> /dev/null; then
+    echo "Installing Doom Emacs ..."
+    git clone --depth 1 https://github.com/doomemacs/doomemacs ~/.config/emacs
+    ~/.config/emacs/bin/doom install-devel
+fi
+#+end_src
+*** add to PATH
+#+begin_src shell :tangle path.sh
+export PATH=$PATH:~/.config/emacs/bin
+#+end_src
+** Doom Modules
+#+begin_src emacs-lisp :tangle ~/.config/doom/init.el
+(doom! :input
+       ;;bidi              ; (tfel ot) thgir etirw uoy gnipleh
+       ;;chinese
+       ;;japanese
+       ;;layout            ; auie,ctsrnm is the superior home row
+
+       :completion
+       company           ; the ultimate code completion backend
+       ;;helm              ; the *other* search engine for love and life
+       ;;ido               ; the other *other* search engine...
+       ;;ivy               ; a search engine for love and life
+       vertico           ; the search engine of the future
+
+       :ui
+       ;;deft              ; notational velocity for Emacs
+       doom              ; what makes DOOM look the way it does
+       doom-dashboard    ; a nifty splash screen for Emacs
+       doom-quit         ; DOOM quit-message prompts when you quit Emacs
+       (emoji +unicode)  ; 🙂
+       hl-todo           ; highlight TODO/FIXME/NOTE/DEPRECATED/HACK/REVIEW
+       ;;hydra
+       ;;indent-guides     ; highlighted indent columns
+       ;;ligatures         ; ligatures and symbols to make your code pretty again
+       ;;minimap           ; show a map of the code on the side
+       modeline          ; snazzy, Atom-inspired modeline, plus API
+       nav-flash         ; blink cursor line after big motions
+       ;;neotree           ; a project drawer, like NERDTree for vim
+       ophints           ; highlight the region an operation acts on
+       (popup +defaults)   ; tame sudden yet inevitable temporary windows
+       tabs              ; a tab bar for Emacs
+       treemacs          ; a project drawer, like neotree but cooler
+       unicode           ; extended unicode support for various languages
+       (vc-gutter +pretty) ; vcs diff in the fringe
+       vi-tilde-fringe   ; fringe tildes to mark beyond EOB
+       ;;window-select     ; visually switch windows
+       workspaces        ; tab emulation, persistence & separate workspaces
+       ;;zen               ; distraction-free coding or writing
+
+       :editor
+       (evil +everywhere); come to the dark side, we have cookies
+       file-templates    ; auto-snippets for empty files
+       fold              ; (nigh) universal code folding
+       ;;(format +onsave)  ; automated prettiness
+       ;;god               ; run Emacs commands without modifier keys
+       ;;lispy             ; vim for lisp, for people who don't like vim
+       ;;multiple-cursors  ; editing in many places at once
+       ;;objed             ; text object editing for the innocent
+       ;;parinfer          ; turn lisp into python, sort of
+       ;;rotate-text       ; cycle region at point between text candidates
+       snippets          ; my elves. They type so I don't have to
+       ;;word-wrap         ; soft wrapping with language-aware indent
+
+       :emacs
+       dired             ; making dired pretty [functional]
+       electric          ; smarter, keyword-based electric-indent
+       ;;ibuffer         ; interactive buffer management
+       undo              ; persistent, smarter undo for your inevitable mistakes
+       vc                ; version-control and Emacs, sitting in a tree
+
+       :term
+       ;;eshell            ; the elisp shell that works everywhere
+       ;;shell             ; simple shell REPL for Emacs
+       ;;term              ; basic terminal emulator for Emacs
+       vterm             ; the best terminal emulation in Emacs
+
+       :checkers
+       syntax              ; tasing you for every semicolon you forget
+       (spell +flyspell +everywhere) ; tasing you for misspelling mispelling
+       grammar           ; tasing grammar mistake every you make
+
+       :tools
+       ;;ansible
+       biblio           ; Writes a PhD for you (citation needed)
+       ;;collab            ; buffers with friends
+       (debugger +lsp)          ; FIXME stepping through code, to help you add bugs
+       ;;direnv
+       docker
+       ;;editorconfig      ; let someone else argue about tabs vs spaces
+       ;;ein               ; tame Jupyter notebooks with emacs
+       (eval +overlay)     ; run code, run (also, repls)
+       ;;gist              ; interacting with github gists
+       lookup              ; navigate your code and its documentation
+       lsp               ; M-x vscode
+       magit             ; a git porcelain for Emacs
+       ;;make              ; run make tasks from Emacs
+       ;;pass              ; password manager for nerds
+       pdf               ; pdf enhancements
+       ;;prodigy           ; FIXME managing external services & code builders
+       ;;rgb               ; creating color strings
+       ;;taskrunner        ; taskrunner for all your projects
+       ;;terraform         ; infrastructure as code
+       ;;tmux              ; an API for interacting with tmux
+       tree-sitter       ; syntax and parsing, sitting in a tree...
+       ;;upload            ; map local to remote projects via ssh/ftp
+
+       :os
+       (:if IS-MAC macos)  ; improve compatibility with macOS
+       ;;tty               ; improve the terminal Emacs experience
+
+       :lang
+       ;;agda              ; types of types of types of types...
+       ;;beancount         ; mind the GAAP
+       (cc +lsp +tree-sitter)         ; C > C++ == 1
+       ;;clojure           ; java with a lisp
+       ;;common-lisp       ; if you've seen one lisp, you've seen them all
+       ;;coq               ; proofs-as-programs
+       ;;crystal           ; ruby at the speed of c
+       ;;csharp            ; unity, .NET, and mono shenanigans
+       ;;data              ; config/data formats
+       ;;(dart +flutter)   ; paint ui and not much else
+       ;;dhall
+       ;;elixir            ; erlang done right
+       ;;elm               ; care for a cup of TEA?
+       emacs-lisp        ; drown in parentheses
+       ;;erlang            ; an elegant language for a more civilized age
+       ;;ess               ; emacs speaks statistics
+       ;;factor
+       ;;faust             ; dsp, but you get to keep your soul
+       ;;fortran           ; in FORTRAN, GOD is REAL (unless declared INTEGER)
+       ;;fsharp            ; ML stands for Microsoft's Language
+       ;;fstar             ; (dependent) types and (monadic) effects and Z3
+       ;;gdscript          ; the language you waited for
+       ;;(go +lsp)         ; the hipster dialect
+       ;;(graphql +lsp)    ; Give queries a REST
+       ;;(haskell +lsp)    ; a language that's lazier than I am
+       ;;hy                ; readability of scheme w/ speed of python
+       ;;idris             ; a language you can depend on
+       json              ; At least it ain't XML
+       ;;(java +lsp)       ; the poster child for carpal tunnel syndrome
+       ;;javascript        ; all(hope(abandon(ye(who(enter(here))))))
+       ;;julia             ; a better, faster MATLAB
+       ;;kotlin            ; a better, slicker Java(Script)
+       (latex +fold +latexmk +lsp)             ; writing papers in Emacs has never been so fun
+       ;;lean              ; for folks with too much to prove
+       ;;ledger            ; be audit you can be
+       ;;lua               ; one-based indices? one-based indices
+       markdown          ; writing docs for people to ignore
+       ;;nim               ; python + lisp at the speed of c
+       ;;nix               ; I hereby declare "nix geht mehr!"
+       ;;ocaml             ; an objective camel
+       (org +roam2 +dragndrop +pretty +present)               ; organize your plain life in plain text
+       ;;php               ; perl's insecure younger brother
+       ;;plantuml          ; diagrams for confusing people more
+       ;;purescript        ; javascript, but functional
+       (python +conda +lsp +pyright +pyenv +tree-sitter)            ; beautiful is better than ugly
+       ;;qt                ; the 'cutest' gui framework ever
+       ;;racket            ; a DSL for DSLs
+       ;;raku              ; the artist formerly known as perl6
+       ;;rest              ; Emacs as a REST client
+       ;;rst               ; ReST in peace
+       ;;(ruby +rails)     ; 1.step {|i| p "Ruby is #{i.even? ? 'love' : 'life'}"}
+       ;;(rust +lsp)       ; Fe2O3.unwrap().unwrap().unwrap().unwrap()
+       ;;scala             ; java, but good
+       ;;(scheme +guile)   ; a fully conniving family of lisps
+       sh                ; she sells {ba,z,fi}sh shells on the C xor
+       ;;sml
+       ;;solidity          ; do you need a blockchain? No.
+       ;;swift             ; who asked for emoji variables?
+       ;;terra             ; Earth and Moon in alignment for performance.
+       ;;web               ; the tubes
+       yaml              ; JSON, but readable
+       ;;zig               ; C, but simpler
+
+       :email
+       ;;(mu4e +org +gmail)
+       ;;notmuch
+       ;;(wanderlust +gmail)
+
+       :app
+       calendar
+       ;;emms
+       ;;everywhere        ; *leave* Emacs!? You must be joking
+       ;;irc               ; how neckbeards socialize
+       ;;(rss +org)        ; emacs as an RSS reader
+       ;;twitter           ; twitter client https://twitter.com/vnought
+
+       :config
+       ;; literate
+       (default +bindings +smartparens))
+#+end_src
+
+** General Configuration
+*** TODO User Information
+#+begin_src emacs-lisp :tangle ~/.config/doom/config.el
+(setq user-full-name "Paul Lödige"
+      user-mail-address "paul@gve-loedige.de")
+#+end_src
+
+*** Visual Settings
+**** Font
+#+begin_src emacs-lisp :tangle ~/.config/doom/config.el
+(setq doom-font (font-spec :family "Ubuntu Mono" :size 16)
+      doom-variable-pitch-font (font-spec :family "Ubuntu" :size 14))
+#+end_src
+
+**** Line Numbering
+having used Neovim for quiet some time I got used to relative line numbering for navigation.
+Until I get used to the [[https://github.com/Greduan/emacs-theme-gruvbox][evil-snipe]] navigation I would like to keep them.
+#+begin_src emacs-lisp :tangle ~/.config/doom/config.el
+(setq display-line-numbers-type 'relative)
+#+end_src
+
+*** TODO Authentication
+Authentication information will be stored in a encrypted file that is part of my dotfiles
+#+begin_src emacs-lisp :tangle ~/.config/doom/config.el
+(setq auth-sources
+    '((:source "~/.authinfo.gpg")))
+#+end_src
+*** Misc
+**** Set Start of Week to Monday
+#+begin_src emacs-lisp :tangle ~/.config/doom/init.el
+(setq calendar-week-start-day 1)
+#+end_src
+** Multilanguage Spellcheck
+Enables use of multiple dictionaries. In my case German and English
+#+begin_src emacs-lisp :tangle ~/.config/doom/config.el
+(with-eval-after-load "ispell"
+  (setq ispell-program-name "hunspell")
+  (setq ispell-dictionary "en_US,de_DE")
+  (ispell-set-spellchecker-params)
+  (ispell-hunspell-add-multi-dic "en_US,de_DE"))
+#+end_src
+
+** TODO LaTeX
+*** Set PDF Viewer
+#+begin_src emacs-lisp :tangle ~/.config/doom/config.el
+(setq +latex-viewers '(zathura))
+#+end_src
+requires zathura to be installed
+#+begin_src shell :tangle pkg-list.txt
+zathura
+#+end_src
+*** Add auto-compile hook for TeX mode
+Because TeX-command-run-all is an interactive command we need a helper function for the hook.
+This function could also become useful if we ever want to extend the compile command
+#+begin_src emacs-lisp :tangle ~/.config/doom/config.el
+(defun custom-tex-compile ()
+  (interactive)
+  (TeX-command-run-all nil))
+
+(add-hook 'TeX-mode-hook
+          (lambda ()
+            (add-hook 'after-save-hook #'custom-tex-compile nil t)))
+#+end_src
+
+** Org Mode
+*** Default Location
+#+begin_src emacs-lisp :tangle ~/.config/doom/config.el
+(setq org-directory "~/org/")
+#+end_src
+*** Visual
+**** Enable Header Numbering
+#+begin_src emacs-lisp :tangle ~/.config/doom/config.el
+(after! org
+  (setq org-startup-numerated t))
+#+end_src
+**** Image Display as Default
+[[https://emacs.stackexchange.com/questions/57603/how-to-always-display-inline-images-by-default-existing-solutions-dont-seem-to#comment89772_57607][this stackexchange comment]] states that this has to be done before the [[Add "~/org" to Agenda][adding the ~/org directory to Org Agenda]]
+#+begin_src emacs-lisp :tangle ~/.config/doom/config.el
+(after! org
+  (setq org-startup-with-inline-images t))
+#+end_src
+**** Enable \LaTeX preview on default
+#+begin_src emacs-lisp :tangle ~/.config/doom/init.el
+(after! org
+  (setq org-startup-latex-with-latex-preview t))
+#+end_src
+
+*** CalDAV Sync
+[[https://github.com/dengste/org-caldav][org-caldav]] provides a tool for syncing with a CalDAV server (in my case Nextcloud).
+A lot of the config is also taken from [[https://www.reddit.com/r/orgmode/comments/8rl8ep/comment/e0sb5j0/?utm_source=share&utm_medium=web3x&utm_name=web3xcss&utm_term=1&utm_content=share_button][this]] reddit post.
+**** org-caldav installation
+#+begin_src emacs-lisp :tangle ~/.config/doom/packages.el
+(package! org-caldav)
+#+end_src
+**** Enable TODOs
+#+begin_src emacs-lisp :tangle ~/.config/doom/config.el
+(after! org-caldav
+  (setq org-icalendar-include-todo 'all
+    org-caldav-sync-todo t))
+#+end_src
+**** Configure Sync
+add the calendars to the org-caldav config
+#+begin_src emacs-lisp :tangle ~/.config/doom/config.el
+(after! org-caldav
+  (setq org-caldav-url "https://cloud.ploedige.com/remote.php/dav/calendars/paul-loedige")
+  (setq org-caldav-sync-direction 'org->cal)
+  (setq org-caldav-calendars
+        '((:calendar-id "todo" :files ("~/org/todo.org")))))
+#+end_src
+*** Org Agenda Setup
+**** Progress States
+To get a more nuanced overview of my current TODOs I add more progress states.
+|            | INACTIVE | TODO | BLOCKED | IN_PROGRESS | REVIEW | TESTING |   | DONE | DELEGATED | CANCELED |   |
+|------------+----------+------+---------+-------------+--------+---------+---+------+-----------+----------+---|
+| Access Key | i        | t    | b       | i           | r      | t       |   | d    |           | c        |   |
+| Log Type   | time     | time | note    | time        | note   | note    |   | time | note      | note     |   |
+#+begin_src emacs-lisp :tangle ~/.config/doom/config.el
+(after! org
+  (setq org-todo-keywords
+        '((sequence "INACTIVE(i!)" "TODO(t!)" "IN_PROGRESS(p!)" "BLOCKED(b@)" "REVIEW(r@)" "TESTING(e@)" "|" "DONE(d!)" "DELEGATED(x@)" "CANCELED(c@)"))))
+#+end_src
+Also set the percent states for [[*CalDAV Sync][CalDAV Sync]]
+#+begin_src emacs-lisp :tangle ~/.config/doom/config.el
+(after! org-caldav
+  (setq org-caldav-todo-percent-states '((0 "INACTIVE") (1 "TODO") (2 "IN_PROGRESS") (3 "BLOCKED") (90 "REVIEW") (90 "TESTING") (100 "DONE") (100 "DELEGATED") (100 "CANCELED"))))
+#+end_src
+**** Add "~/org" to Agenda
+#+begin_src emacs-lisp :tangle ~/.config/doom/config.el
+(after! org
+  (setq org-agenda-files (f-files "~/org"
+                                  (lambda (f)
+                                    (string= (f-ext f) "org"))
+                                  'recursive)))
+#+end_src
+*** Org Roam
+**** set base directory
+Both the org files themselves and the database should be located in the same directory to enable syncing via Nextcloud
+#+begin_src emacs-lisp :tangle ~/.config/doom/config.el
+(after! org
+  (setq org-roam-directory (file-truename "~/org/org-roam"))
+  (org-roam-db-autosync-mode))
+#+end_src
+**** Note Templates
+This contains all the capture templates I am using.
+Adding the "#+category: " tag improves the Org Agenda View for tasks captured in Org Roam
+#+begin_src emacs-lisp :tangle ~/.config/doom/config.el
+(after! org-roam
+  (setq org-roam-capture-templates
+  '(("d" "default" plain
+      "%?"
+      :if-new (file+head "%<%Y%m%d%H%M%S>-${slug}.org" "#+title: ${title}\n#+category: ${title}\n")
+      :unnarrowed t)
+    ("m" "Meeting Templates")
+    ("mm" "Meeting Master Thesis" plain
+      "* Current Progress\n\n* Open Questions\n\n* TODOs\n"
+      :if-new (file+head "%<%Y%m%d%H%M%S>-${slug}.org" "#+title: Master Thesis Meeting ${title}\n#+category: Master Thesis\n")
+      :unnarrowed t))))
+#+end_src
+**** Misc
+***** Follow Links on RET
+Because the normal shortcut for `org-open-at-point` is quite cumbersome I want it to just follow links when clicking the RET button
+#+begin_src emacs-lisp :tangle ~/.config/doom/config.el
+(after! org
+  (setq return-follows-link t))
+#+end_src
+*** Org Transclusion
+**** Installation
+#+begin_src emacs-lisp :tangle ~/.config/doom/packages.el
+(package! org-transclusion)
+#+end_src
+*** Bibliography
+**** TODO Enabling Zotero Links
+Following [[https://www.riccardopinosio.com/blog/posts/zotero_notes_article.html#opening-zotero-pdf-from-org-roam][this guide]] we enable using zotero links with the following code
+#+begin_src emacs-lisp :tangle ~/.config/doom/config.el
+(after! org
+  :custom
+  (org-link-set-parameters "zotero" :follow
+                           (lambda (zpath)
+                             (browse-url
+                              (format "zotero:%s" zpath)))))
+#+end_src
+**** Citar Config
+***** Setting the Citar Bibliography
+Following the [[https://github.com/doomemacs/doomemacs/tree/master/modules/tools/biblio][Doom Emacs documentation ]]we set the citar bibliography and notes paths
+#+begin_src emacs-lisp :tangle ~/.config/doom/config.el
+(after! oc
+  (setq citar-bibliography '("~/org/biblio.bib"))
+  (setq citar-notes-paths '("~/org/org-roam/")))
+#+end_src
+***** Citar Templates
+Following the [[https://github.com/emacs-citar/citar#configuration][citar package documentation]] we modify the note template to contain the pdf link to Zotero
+*NOTE:* This requires the a [[https://www.riccardopinosio.com/blog/posts/zotero_notes_article.html#opening-zotero-pdf-from-org-roam][specific Zotero Export Configuration]]
+#+begin_src emacs-lisp :tangle ~/.config/doom/config.el
+(after! oc
+  (setq citar-templates
+      '((main . "${author editor:30%sn}     ${date year issued:4}     ${title:48}")
+        (suffix . "          ${=key= id:15}    ${=type=:12}    ${tags keywords:*}")
+        (preview . "${author editor:%etal} (${year issued date}) ${title}, ${journal journaltitle publisher container-title collection-title}.\n")
+        (note . "Notes on ${author editor:%etal}, ${title}\npdf: ${file}"))))
+#+end_src
+***** Enable Zotero Link Support
+In [[https://www.riccardopinosio.com/blog/posts/zotero_notes_article.html#citar][this tutorial]] I found the config for enabling Zotero Link Support through Citar
+#+begin_src emacs-lisp :tangle ~/.config/doom/config.el
+(after! citar
+  (defadvice! riccardo/citar-file-trust-zotero (oldfun &rest r)
+    "Leave Zotero-generated file paths alone, especially zotero://..."
+    :around '(citar-file-open citar-file--find-files-in-dirs)
+    (cl-letf (((symbol-function 'file-exists-p) #'always)
+              ((symbol-function 'expand-file-name) (lambda (first &rest _) first)))
+      (apply oldfun r)))
+
+  (add-to-list 'citar-file-open-functions '("pdf" . citar-file-open-external)))
+#+end_src
+
+** Python
+*** TODO Set Debugger to debugpy
+as per the [[https://github.com/doomemacs/doomemacs/tree/master/modules/tools/debugger#dap-python][Doom Emacs Documentation]] it is recommended to set the debugger used for python debugging to debugpy
+#+begin_src emacs-lisp :tangle ~/.config/doom/config.el
+(after! dap-mode
+  (setq dap-python-debugger 'debugpy))
+#+end_src
+
+* Shells
+** Aliases
+*** Shutdown and Reboot
+#+begin_src shell :tangle alias.sh
+alias sn='shutdown now'
+alias rb='reboot'
+#+end_src
+*** Confirm before overwriting
+#+begin_src shell :tangle alias.sh
+alias cp="cp -i"
+alias mv='mv -i'
+alias rm='rm -i'
+#+end_src
+
+* Themeing
+** Doom Emacs
+I like the [[https://github.com/Greduan/emacs-theme-gruvbox][Gruvbox Theme by Eduardo Lavaque]].
+For this we first need to install the specific package
+#+begin_src emacs-lisp :tangle ~/.config/doom/packages.el
+(package! gruvbox-theme)
+#+end_src
+and then set it
+#+begin_src emacs-lisp :tangle ~/.config/doom/config.el
+(setq doom-theme 'gruvbox-dark-hard)
+#+end_src