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PWL Arch Linux Config

Table of Contents   toc

Prerequisites

  • Completed Arch Linux Installation

    • partitioning
    • encryption
    • main user

Literate File Headers

update.sh 

#!/bin/sh
# DO NOT EDIT THIS FILE DIRECTLY
# This is a file generated from a literate programing source file
# You should make any changes there and regenerate it from Emacs org-mode
# using org-babel-tangle (C-c C-v t)

packages.txt

contains all Arch and AUR packages

# DO NOT EDIT THIS FILE DIRECTLY
# This is a file generated from a literate programing source file
# You should make any changes there and regenerate it from Emacs org-mode
# using org-babel-tangle (C-c C-v t)

alias.sh 

#!/bin/sh
# DO NOT EDIT THIS FILE DIRECTLY
# This is a file generated from a literate programing source file
# You should make any changes there and regenerate it from Emacs org-mode
# using org-babel-tangle (C-c C-v t)

path.sh

contains all modifications to the path variables

#!/bin/sh
# DO NOT EDIT THIS FILE DIRECTLY
# This is a file generated from a literate programing source file
# You should make any changes there and regenerate it from Emacs org-mode
# using org-babel-tangle (C-c C-v t)

Doom Emacs

We start by simply defining the standard headers used by the three files. These headers come from the initial files generated by doom install, and contain either some Emacs-LISP relevant indicators like lexical-binding, or instructions about the contents of the file.

init.el

init.el 
;;; init.el -*- lexical-binding: t; -*-

;; DO NOT EDIT THIS FILE DIRECTLY
;; This is a file generated from a literate programing source file
;; You should make any changes there and regenerate it from Emacs org-mode
;; using org-babel-tangle (C-c C-v t)

;; This file controls what Doom modules are enabled and what order they load
;; in. Remember to run 'doom sync' after modifying it!

;; NOTE Press 'SPC h d h' (or 'C-h d h' for non-vim users) to access Doom's
;;      documentation. There you'll find a "Module Index" link where you'll find
;;      a comprehensive list of Doom's modules and what flags they support.

;; NOTE Move your cursor over a module's name (or its flags) and press 'K' (or
;;      'C-c c k' for non-vim users) to view its documentation. This works on
;;      flags as well (those symbols that start with a plus).
;;
;;      Alternatively, press 'gd' (or 'C-c c d') on a module to browse its
;;      directory (for easy access to its source code).

packages.el

packages.el 
;; -*- no-byte-compile: t; -*-
;;; $DOOMDIR/packages.el

;; DO NOT EDIT THIS FILE DIRECTLY
;; This is a file generated from a literate programing source file
;; You should make any changes there and regenerate it from Emacs org-mode
;; using org-babel-tangle (C-c C-v t)

;; To install a package with Doom you must declare them here and run 'doom sync'
;; on the command line, then restart Emacs for the changes to take effect -- or
;; use 'M-x doom/reload'.

;; To install SOME-PACKAGE from MELPA, ELPA or emacsmirror:
;;(package! some-package)

;; To install a package directly from a remote git repo, you must specify a
;; `:recipe'. You'll find documentation on what `:recipe' accepts here:
;; https://github.com/raxod502/straight.el#the-recipe-format
;;(package! another-package
;;  :recipe (:host github :repo "username/repo"))

;; If the package you are trying to install does not contain a PACKAGENAME.el
;; file, or is located in a subdirectory of the repo, you'll need to specify
;; `:files' in the `:recipe':
;;(package! this-package
;;  :recipe (:host github :repo "username/repo"
;;           :files ("some-file.el" "src/lisp/*.el")))

;; If you'd like to disable a package included with Doom, you can do so here
;; with the `:disable' property:
;;(package! builtin-package :disable t)

;; You can override the recipe of a built in package without having to specify
;; all the properties for `:recipe'. These will inherit the rest of its recipe
;; from Doom or MELPA/ELPA/Emacsmirror:
;;(package! builtin-package :recipe (:nonrecursive t))
;;(package! builtin-package-2 :recipe (:repo "myfork/package"))

;; Specify a `:branch' to install a package from a particular branch or tag.
;; This is required for some packages whose default branch isn't 'master' (which
;; our package manager can't deal with; see raxod502/straight.el#279)
;;(package! builtin-package :recipe (:branch "develop"))

;; Use `:pin' to specify a particular commit to install.
;;(package! builtin-package :pin "1a2b3c4d5e")

;; Doom's packages are pinned to a specific commit and updated from release to
;; release. The `unpin!' macro allows you to unpin single packages...
;;(unpin! pinned-package)
;; ...or multiple packages
;;(unpin! pinned-package another-pinned-package)
;; ...Or *all* packages (NOT RECOMMENDED; will likely break things)
;;(unpin! t)

config.el

config.el 
;;; $DOOMDIR/config.el -*- lexical-binding: t; -*-

;; DO NOT EDIT THIS FILE DIRECTLY
;; This is a file generated from a literate programing source file
;; You should make any changes there and regenerate it from Emacs org-mode
;; using org-babel-tangle (C-c C-v t)

;; Place your private configuration here! Remember, you do not need to run 'doom
;; sync' after modifying this file!

;; Some functionality uses this to identify you, e.g. GPG configuration, email
;; clients, file templates and snippets.
;; (setq user-full-name "John Doe"
;;      user-mail-address "john@doe.com")

;; Doom exposes five (optional) variables for controlling fonts in Doom. Here
;; are the three important ones:
;;
;; + `doom-font'
;; + `doom-variable-pitch-font'
;; + `doom-big-font' -- used for `doom-big-font-mode'; use this for
;;   presentations or streaming.
;;
;; They all accept either a font-spec, font string ("Input Mono-12"), or xlfd
;; font string. You generally only need these two:
;; (setq doom-font (font-spec :family "monospace" :size 12 :weight 'semi-light)
;;       doom-variable-pitch-font (font-spec :family "sans" :size 13))

;; There are two ways to load a theme. Both assume the theme is installed and
;; available. You can either set `doom-theme' or manually load a theme with the
;; `load-theme' function. This is the default:
;; (setq doom-theme 'doom-one)

;; If you use `org' and don't want your org files in the default location below,
;; change `org-directory'. It must be set before org loads!
;; (setq org-directory "~/org/")

;; This determines the style of line numbers in effect. If set to `nil', line
;; numbers are disabled. For relative line numbers, set this to `relative'.
;; (setq display-line-numbers-type t)

;; Here are some additional functions/macros that could help you configure Doom:
;;
;; - `load!' for loading external *.el files relative to this one
;; - `use-package!' for configuring packages
;; - `after!' for running code after a package has loaded
;; - `add-load-path!' for adding directories to the `load-path', relative to
;;   this file. Emacs searches the `load-path' when you load packages with
;;   `require' or `use-package'.
;; - `map!' for binding new keys
;;
;; To get information about any of these functions/macros, move the cursor over
;; the highlighted symbol at press 'K' (non-evil users must press 'C-c c k').
;; This will open documentation for it, including demos of how they are used.
;;
;; You can also try 'gd' (or 'C-c c d') to jump to their definition and see how
;; they are implemented.

.zshrc 

# DO NOT EDIT THIS FILE DIRECTLY
# This is a file generated from a literate programing source file
# You should make any changes there and regenerate it from Emacs org-mode
# using org-babel-tangle (C-c C-v t)

.bashrc 

# DO NOT EDIT THIS FILE DIRECTLY
# This is a file generated from a literate programing source file
# You should make any changes there and regenerate it from Emacs org-mode
# using org-babel-tangle (C-c C-v t)

Package Management

Arch and AUR Packages

Yay

Prerequisites 
git
base-devel
Installation

General Package Management is done via Yay. update.sh will install it if needed.

command_name="yay"

if ! command -v "$command_name" &> /dev/null; then
    echo "Installing $command_name ..."
    git clone https://aur.archlinux.org/yay.git /tmp/yay
    cd /tmp/yay
    makepkg -si
fi

after installation add yay to the packages list to ensure it doesn't delete itself

yay

Package Installation

remove all packages not in pkg-list.txt

# Get list of installed packages
INSTALLED_PACKAGES=$(yay -Qqe)

# Read the list of packages to keep from the file
KEEP_LIST=$(cat "pkg-list.txt")

# Loop through installed packages
for PACKAGE in $INSTALLED_PACKAGES; do
    # Check if the package is not in the keep list
    if ! echo "$KEEP_LIST" | grep -q "^$PACKAGE$"; then
        echo "Removing package: $PACKAGE"
        # Uncomment the following line to actually remove the package
        yay -Rns --noconfirm "$PACKAGE"
    fi
done

and install the packages specified in pkg-list.txt

yay -S --needed `grep -v '^#' pkg-list.txt`

Base System

Arch Linux

the following packages are required for basic operation and should never be deleted

amd-ucode
base
efibootmgr
grub
linux-zen
linux-lts
linux-firmware
lvm2
sudo

Networking

This config uses the NetworkManager

networkmanager

after being installed it also needs to be enabled

systemd_service="NetworkManager"
if ! systemctl is-enabled --quiet "$systemd_service"; then
    echo "Enabling $systemd_service"
    sudo systemctl enable "$systemd_service"
    sudo systemctl start "$systemd_service"
fi

Man Pages and Texinfo 

man-db
man-pages
texinfo

Desktop Environments and Window Manager

LightDM

install the required packages

lightdm
lightdm-gtk-greeter

and enable the systemd service

systemd_service="lightdm"
if ! systemctl is-enabled --quiet "$systemd_service"; then
    echo "Enabling $systemd_service"
    sudo systemctl enable "$systemd_service"
fi

GNOME

GNOME is installed as a fallback in case the main Window Manager breaks

gnome

TODO GNOME programs 

evince
gnome-color-manager
gnome-keyring
gnome-session
gnome-settings-daemon
gnome-shell
gvfs
gvfs-goa
sushi
tecla
totem
tracker3-miners
xdg-desktop-portal-gnome
xdg-user-dirs-gtk
yay-debug
yelp

Text Editors

Doom Emacs

Installation

Prerequisites 
git
emacs
ripgrep
findutils
fd
Doom Installation

update.sh will install Doom Emacs if needed

if [ ! -d "/home/paul/.config/doom" ]; then
    echo "Installing Doom Emacs ..."
    git clone --depth 1 https://github.com/doomemacs/doomemacs /home/paul/.config/emacs
    /home/paul/.config/emacs/bin/doom install-devel
fi
add to PATH 
export PATH=$PATH:~/.config/emacs/bin

Doom Modules 

(doom! :input
       ;;bidi              ; (tfel ot) thgir etirw uoy gnipleh
       ;;chinese
       ;;japanese
       ;;layout            ; auie,ctsrnm is the superior home row

       :completion
       company           ; the ultimate code completion backend
       ;;helm              ; the *other* search engine for love and life
       ;;ido               ; the other *other* search engine...
       ;;ivy               ; a search engine for love and life
       vertico           ; the search engine of the future

       :ui
       ;;deft              ; notational velocity for Emacs
       doom              ; what makes DOOM look the way it does
       doom-dashboard    ; a nifty splash screen for Emacs
       doom-quit         ; DOOM quit-message prompts when you quit Emacs
       (emoji +unicode)  ; 🙂
       hl-todo           ; highlight TODO/FIXME/NOTE/DEPRECATED/HACK/REVIEW
       ;;hydra
       ;;indent-guides     ; highlighted indent columns
       ;;ligatures         ; ligatures and symbols to make your code pretty again
       ;;minimap           ; show a map of the code on the side
       modeline          ; snazzy, Atom-inspired modeline, plus API
       nav-flash         ; blink cursor line after big motions
       ;;neotree           ; a project drawer, like NERDTree for vim
       ophints           ; highlight the region an operation acts on
       (popup +defaults)   ; tame sudden yet inevitable temporary windows
       tabs              ; a tab bar for Emacs
       treemacs          ; a project drawer, like neotree but cooler
       unicode           ; extended unicode support for various languages
       (vc-gutter +pretty) ; vcs diff in the fringe
       vi-tilde-fringe   ; fringe tildes to mark beyond EOB
       ;;window-select     ; visually switch windows
       workspaces        ; tab emulation, persistence & separate workspaces
       ;;zen               ; distraction-free coding or writing

       :editor
       (evil +everywhere); come to the dark side, we have cookies
       file-templates    ; auto-snippets for empty files
       fold              ; (nigh) universal code folding
       ;;(format +onsave)  ; automated prettiness
       ;;god               ; run Emacs commands without modifier keys
       ;;lispy             ; vim for lisp, for people who don't like vim
       ;;multiple-cursors  ; editing in many places at once
       ;;objed             ; text object editing for the innocent
       ;;parinfer          ; turn lisp into python, sort of
       ;;rotate-text       ; cycle region at point between text candidates
       snippets          ; my elves. They type so I don't have to
       ;;word-wrap         ; soft wrapping with language-aware indent

       :emacs
       dired             ; making dired pretty [functional]
       electric          ; smarter, keyword-based electric-indent
       ;;ibuffer         ; interactive buffer management
       undo              ; persistent, smarter undo for your inevitable mistakes
       vc                ; version-control and Emacs, sitting in a tree

       :term
       ;;eshell            ; the elisp shell that works everywhere
       ;;shell             ; simple shell REPL for Emacs
       ;;term              ; basic terminal emulator for Emacs
       vterm             ; the best terminal emulation in Emacs

       :checkers
       syntax              ; tasing you for every semicolon you forget
       (spell +flyspell +everywhere) ; tasing you for misspelling mispelling
       grammar           ; tasing grammar mistake every you make

       :tools
       ;;ansible
       biblio           ; Writes a PhD for you (citation needed)
       ;;collab            ; buffers with friends
       (debugger +lsp)          ; FIXME stepping through code, to help you add bugs
       ;;direnv
       docker
       ;;editorconfig      ; let someone else argue about tabs vs spaces
       ;;ein               ; tame Jupyter notebooks with emacs
       (eval +overlay)     ; run code, run (also, repls)
       ;;gist              ; interacting with github gists
       lookup              ; navigate your code and its documentation
       lsp               ; M-x vscode
       magit             ; a git porcelain for Emacs
       ;;make              ; run make tasks from Emacs
       ;;pass              ; password manager for nerds
       pdf               ; pdf enhancements
       ;;prodigy           ; FIXME managing external services & code builders
       ;;rgb               ; creating color strings
       ;;taskrunner        ; taskrunner for all your projects
       ;;terraform         ; infrastructure as code
       ;;tmux              ; an API for interacting with tmux
       tree-sitter       ; syntax and parsing, sitting in a tree...
       ;;upload            ; map local to remote projects via ssh/ftp

       :os
       (:if IS-MAC macos)  ; improve compatibility with macOS
       ;;tty               ; improve the terminal Emacs experience

       :lang
       ;;agda              ; types of types of types of types...
       ;;beancount         ; mind the GAAP
       (cc +lsp +tree-sitter)         ; C > C++ == 1
       ;;clojure           ; java with a lisp
       ;;common-lisp       ; if you've seen one lisp, you've seen them all
       ;;coq               ; proofs-as-programs
       ;;crystal           ; ruby at the speed of c
       ;;csharp            ; unity, .NET, and mono shenanigans
       ;;data              ; config/data formats
       ;;(dart +flutter)   ; paint ui and not much else
       ;;dhall
       ;;elixir            ; erlang done right
       ;;elm               ; care for a cup of TEA?
       emacs-lisp        ; drown in parentheses
       ;;erlang            ; an elegant language for a more civilized age
       ;;ess               ; emacs speaks statistics
       ;;factor
       ;;faust             ; dsp, but you get to keep your soul
       ;;fortran           ; in FORTRAN, GOD is REAL (unless declared INTEGER)
       ;;fsharp            ; ML stands for Microsoft's Language
       ;;fstar             ; (dependent) types and (monadic) effects and Z3
       ;;gdscript          ; the language you waited for
       ;;(go +lsp)         ; the hipster dialect
       ;;(graphql +lsp)    ; Give queries a REST
       ;;(haskell +lsp)    ; a language that's lazier than I am
       ;;hy                ; readability of scheme w/ speed of python
       ;;idris             ; a language you can depend on
       json              ; At least it ain't XML
       ;;(java +lsp)       ; the poster child for carpal tunnel syndrome
       ;;javascript        ; all(hope(abandon(ye(who(enter(here))))))
       ;;julia             ; a better, faster MATLAB
       ;;kotlin            ; a better, slicker Java(Script)
       (latex +fold +latexmk +lsp)             ; writing papers in Emacs has never been so fun
       ;;lean              ; for folks with too much to prove
       ;;ledger            ; be audit you can be
       ;;lua               ; one-based indices? one-based indices
       markdown          ; writing docs for people to ignore
       ;;nim               ; python + lisp at the speed of c
       ;;nix               ; I hereby declare "nix geht mehr!"
       ;;ocaml             ; an objective camel
       (org +roam2 +dragndrop +pretty +present)               ; organize your plain life in plain text
       ;;php               ; perl's insecure younger brother
       ;;plantuml          ; diagrams for confusing people more
       ;;purescript        ; javascript, but functional
       (python +conda +lsp +pyright +pyenv +tree-sitter)            ; beautiful is better than ugly
       ;;qt                ; the 'cutest' gui framework ever
       ;;racket            ; a DSL for DSLs
       ;;raku              ; the artist formerly known as perl6
       ;;rest              ; Emacs as a REST client
       ;;rst               ; ReST in peace
       ;;(ruby +rails)     ; 1.step {|i| p "Ruby is #{i.even? ? 'love' : 'life'}"}
       ;;(rust +lsp)       ; Fe2O3.unwrap().unwrap().unwrap().unwrap()
       ;;scala             ; java, but good
       ;;(scheme +guile)   ; a fully conniving family of lisps
       sh                ; she sells {ba,z,fi}sh shells on the C xor
       ;;sml
       ;;solidity          ; do you need a blockchain? No.
       ;;swift             ; who asked for emoji variables?
       ;;terra             ; Earth and Moon in alignment for performance.
       ;;web               ; the tubes
       yaml              ; JSON, but readable
       ;;zig               ; C, but simpler

       :email
       ;;(mu4e +org +gmail)
       ;;notmuch
       ;;(wanderlust +gmail)

       :app
       calendar
       ;;emms
       ;;everywhere        ; *leave* Emacs!? You must be joking
       ;;irc               ; how neckbeards socialize
       ;;(rss +org)        ; emacs as an RSS reader
       ;;twitter           ; twitter client https://twitter.com/vnought

       :config
       ;; literate
       (default +bindings +smartparens))

General Configuration

TODO User Information 
(setq user-full-name "Paul Lödige"
      user-mail-address "paul@gve-loedige.de")
Visual Settings
Font 
(setq doom-font (font-spec :family "Ubuntu Mono" :size 16)
      doom-variable-pitch-font (font-spec :family "Ubuntu" :size 14))
Line Numbering

having used Neovim for quiet some time I got used to relative line numbering for navigation. Until I get used to the evil-snipe navigation I would like to keep them.

(setq display-line-numbers-type 'relative)
TODO Authentication

Authentication information will be stored in a encrypted file that is part of my dotfiles

(setq auth-sources
    '((:source "~/.authinfo.gpg")))
Misc
Set Start of Week to Monday 
(setq calendar-week-start-day 1)

Multilanguage Spellcheck

Enables use of multiple dictionaries. In my case German and English

(with-eval-after-load "ispell"
  (setq ispell-program-name "hunspell")
  (setq ispell-dictionary "en_US,de_DE")
  (ispell-set-spellchecker-params)
  (ispell-hunspell-add-multi-dic "en_US,de_DE"))

TODO LaTeX

Set PDF Viewer 
(setq +latex-viewers '(zathura))
Add auto-compile hook for TeX mode

Because TeX-command-run-all is an interactive command we need a helper function for the hook. This function could also become useful if we ever want to extend the compile command

(defun custom-tex-compile ()
  (interactive)
  (TeX-command-run-all nil))

(add-hook 'TeX-mode-hook
          (lambda ()
            (add-hook 'after-save-hook #'custom-tex-compile nil t)))

Org Mode

Default Location 
(setq org-directory "~/org/")
Visual
Enable Header Numbering 
(after! org
  (setq org-startup-numerated t))
Image Display as Default

this stackexchange comment states that this has to be done before the adding the ~/org directory to Org Agenda

(after! org
  (setq org-startup-with-inline-images t))
Enable \LaTeX preview on default 
(after! org
  (setq org-startup-latex-with-latex-preview t))
CalDAV Sync

org-caldav provides a tool for syncing with a CalDAV server (in my case Nextcloud). A lot of the config is also taken from this reddit post.

org-caldav installation 
(package! org-caldav)
Enable TODOs 
(after! org-caldav
  (setq org-icalendar-include-todo 'all
    org-caldav-sync-todo t))
Configure Sync

add the calendars to the org-caldav config

(after! org-caldav
  (setq org-caldav-url "https://cloud.ploedige.com/remote.php/dav/calendars/paul-loedige")
  (setq org-caldav-sync-direction 'org->cal)
  (setq org-caldav-calendars
        '((:calendar-id "todo" :files ("~/org/todo.org")))))
Org Agenda Setup
Progress States

To get a more nuanced overview of my current TODOs I add more progress states.

INACTIVE TODO BLOCKED IN_PROGRESS REVIEW TESTING DONE DELEGATED CANCELED
Access Key i t b i r t d c
Log Type time time note time note note time note note 
(after! org
  (setq org-todo-keywords
        '((sequence "INACTIVE(i!)" "TODO(t!)" "IN_PROGRESS(p!)" "BLOCKED(b@)" "REVIEW(r@)" "TESTING(e@)" "|" "DONE(d!)" "DELEGATED(x@)" "CANCELED(c@)"))))

Also set the percent states for CalDAV Sync

(after! org-caldav
  (setq org-caldav-todo-percent-states '((0 "INACTIVE") (1 "TODO") (2 "IN_PROGRESS") (3 "BLOCKED") (90 "REVIEW") (90 "TESTING") (100 "DONE") (100 "DELEGATED") (100 "CANCELED"))))
Add "~/org" to Agenda 
(after! org
  (setq org-agenda-files (f-files "~/org"
                                  (lambda (f)
                                    (string= (f-ext f) "org"))
                                  'recursive)))
Org Roam
set base directory

Both the org files themselves and the database should be located in the same directory to enable syncing via Nextcloud

(after! org
  (setq org-roam-directory (file-truename "~/org/org-roam"))
  (org-roam-db-autosync-mode))
Note Templates

This contains all the capture templates I am using. Adding the "#+category: " tag improves the Org Agenda View for tasks captured in Org Roam

(after! org-roam
  (setq org-roam-capture-templates
  '(("d" "default" plain
      "%?"
      :if-new (file+head "%<%Y%m%d%H%M%S>-${slug}.org" "#+title: ${title}\n#+category: ${title}\n")
      :unnarrowed t)
    ("m" "Meeting Templates")
    ("mm" "Meeting Master Thesis" plain
      "* Current Progress\n\n* Open Questions\n\n* TODOs\n"
      :if-new (file+head "%<%Y%m%d%H%M%S>-${slug}.org" "#+title: Master Thesis Meeting ${title}\n#+category: Master Thesis\n")
      :unnarrowed t))))
Misc
Follow Links on RET

Because the normal shortcut for `org-open-at-point` is quite cumbersome I want it to just follow links when clicking the RET button

(after! org
  (setq return-follows-link t))
Org Transclusion
Installation 
(package! org-transclusion)
Bibliography
TODO Enabling Zotero Links

Following this guide we enable using zotero links with the following code

(after! org
  :custom
  (org-link-set-parameters "zotero" :follow
                           (lambda (zpath)
                             (browse-url
                              (format "zotero:%s" zpath)))))
Citar Config
Setting the Citar Bibliography

Following the Doom Emacs documentation we set the citar bibliography and notes paths

(after! oc
  (setq citar-bibliography '("~/org/biblio.bib"))
  (setq citar-notes-paths '("~/org/org-roam/")))
Citar Templates

Following the citar package documentation we modify the note template to contain the pdf link to Zotero NOTE: This requires the a specific Zotero Export Configuration

(after! oc
  (setq citar-templates
      '((main . "${author editor:30%sn}     ${date year issued:4}     ${title:48}")
        (suffix . "          ${=key= id:15}    ${=type=:12}    ${tags keywords:*}")
        (preview . "${author editor:%etal} (${year issued date}) ${title}, ${journal journaltitle publisher container-title collection-title}.\n")
        (note . "Notes on ${author editor:%etal}, ${title}\npdf: ${file}"))))
Enable Zotero Link Support

In this tutorial I found the config for enabling Zotero Link Support through Citar

(after! citar
  (defadvice! riccardo/citar-file-trust-zotero (oldfun &rest r)
    "Leave Zotero-generated file paths alone, especially zotero://..."
    :around '(citar-file-open citar-file--find-files-in-dirs)
    (cl-letf (((symbol-function 'file-exists-p) #'always)
              ((symbol-function 'expand-file-name) (lambda (first &rest _) first)))
      (apply oldfun r)))

  (add-to-list 'citar-file-open-functions '("pdf" . citar-file-open-external)))

Python

TODO Set Debugger to debugpy

as per the Doom Emacs Documentation it is recommended to set the debugger used for python debugging to debugpy

(after! dap-mode
  (setq dap-python-debugger 'debugpy))

VSCode

Installation 

visual-studio-code-bin

TODO Add-Ons

Neovim

Installation 

neovim

TODO Configuration

Shells

ZSH is used as the default shell

Aliases

Shutdown and Reboot 

alias sn='shutdown now'
alias rb='reboot'

Confirm before overwriting 

alias cp="cp -i"
alias mv='mv -i'
alias rm='rm -i'

Git Aliases 

git
alias add='git add'
alias addup='git add -u'
alias addall='git add .'
alias branch='git branch'
alias checkout='git checkout'
alias co='git checkout'
alias clone='git clone'
alias commit='git commit -m'
alias fetch='git fetch'
alias pull='git pull origin'
alias push='git push origin'
alias status='git status'
alias diff='git diff'
alias remote='git remote'
alias ftemplate='git fetch template'
alias mtemplate='git merge template/master --allow-unrelated-histories'
alias log='git log'

ZSH

Installation 

zsh
which

Set as default shell 

if [ "$(basename "$SHELL")" != "zsh" ]; then
    chsh $(which zsh)
fi

Oh-My-Zsh

Installation 
curl

install if needed

if [ ! -d "/home/paul/.oh-my-zsh" ]; then
   echo "Installing Oh-My-Zsh..."
   sh -c "$(curl -fsSL https://raw.githubusercontent.com/ohmyzsh/ohmyzsh/master/tools/install.sh)"
fi
Basic Configuration 
export ZSH="~/.oh-my-zsh"

# Uncomment the following line to use case-sensitive completion.
CASE_SENSITIVE="false"

# Uncomment the following line to use hyphen-insensitive completion.
# Case-sensitive completion must be off. _ and - will be interchangeable.
HYPHEN_INSENSITIVE="true"

# Uncomment the following line to change how often to auto-update (in days).
export UPDATE_ZSH_DAYS=3

# Uncomment the following line to enable command auto-correction.
ENABLE_CORRECTION="true"

# Uncomment the following line to display red dots whilst waiting for completion.
# Caution: this setting can cause issues with multiline prompts (zsh 5.7.1 and newer seem to work)
# See https://github.com/ohmyzsh/ohmyzsh/issues/5765
COMPLETION_WAITING_DOTS="true"
TODO Plugins 
# Which plugins would you like to load?
# Standard plugins can be found in $ZSH/plugins/
# Custom plugins may be added to $ZSH_CUSTOM/plugins/
# Example format: plugins=(rails git textmate ruby lighthouse)
# Add wisely, as too many plugins slow down shell startup.
plugins=(
    git
    svn
    themes
    command-not-found
    vi-mode
    extract
    # # non oh-my-zsh plugins
    # zsh-autosuggestions
    # zsh-syntax-highlighting
    # conda-zsh-completion
)

Powerlevel10k

install if needed

git
if [ ! -d "/home/paul/.oh-my-zsh/custom/themes/powerlevel10k" ]; then
   echo "Installing Powerlevel10k..."
   git clone --depth=1 https://github.com/romkatv/powerlevel10k.git /home/paul/.oh-my-zsh/custom/themes/powerlevel10k
fi

set as zsh theme

ZSH_THEME="powerlevel10k/powerlevel10k"

Configuration

Source Aliases 
source alias.sh
Modify PATH 
source path.sh
neofetch

install

neofetch

and start

neofetch

Bash

Installation 

bash

Configuration

Source Aliases 
source alias.sh
Modify PATH 
source path.sh
neofetch

install

neofetch

and start

neofetch

Themeing

Doom Emacs

I like the Gruvbox Theme by Eduardo Lavaque. For this we first need to install the specific package

(package! gruvbox-theme)

and then set it

(setq doom-theme 'gruvbox-dark-hard)

Misc Programs

Zathura

Installation 

zathura

enable synctex 

set synctex true
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